An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop
نویسندگان
چکیده
منابع مشابه
an investigation of the types of text reduction in subtitling: a case study of the persian film gilaneh with english subtitles
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15 صفحه اولComparison of sequence alignment algorithms
The fact that biological sequences can be represented as strings belonging to a finite alphabet (A, C, G, and T for DNA) plays an important role in connecting biology to computer science. String representation allows researchers to apply various string comparison techniques available in computer science. As a result, various applications have been developed that facilitate the task of sequence ...
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15 صفحه اولMultiple alignment-free sequence comparison
MOTIVATION Recently, a range of new statistics have become available for the alignment-free comparison of two sequences based on k-tuple word content. Here, we extend these statistics to the simultaneous comparison of more than two sequences. Our suite of statistics contains, first, C(*)1 and C(S)1, extensions of statistics for pairwise comparison of the joint k-tuple content of all the sequenc...
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ژورنال
عنوان ژورنال: The Journal of Supercomputing
سال: 2016
ISSN: 0920-8542,1573-0484
DOI: 10.1007/s11227-016-1835-3